Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfogranum mediterraneum DSM 13871 (GCF_000429965.1)

Found 25 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfogranum mediterraneum DSM 13871, or try another query

gcvH G494_RS0108200 WP_028584143.1: glycine cleavage system protein GcvH
is similar to:		 PaperBLAST

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

 42% id,
68% cov

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

 38% id,
73% cov

gcvPB G494_RS0108190 WP_028584141.1: aminomethyl-transferring glycine dehydrogenase subunit GcvPB
is similar to:		 PaperBLAST

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 43% id,
48% cov

PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 42% id,
48% cov

AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 42% id,
48% cov

More...

gcvPA G494_RS0108195 WP_028584142.1: aminomethyl-transferring glycine dehydrogenase subunit GcvPA
is similar to:		 PaperBLAST

PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 35% id,
42% cov

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

 35% id,
42% cov

AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 35% id,
41% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

42341-44002 (frame -3) on NZ_AUCW01000016.1 Desulfogranum mediterraneum DSM 13871 G494DRAFT_scaffold00012.12_C, whole genome shotgun sequence
is similar to:		 PaperBLAST

GCSP_CHICK / P15505: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus
GLDC / P15505: glycine decarboxylase subunit (EC 1.4.4.2) from Gallus gallus
P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus
Also see hits to annotated proteins above

 32% id,
47% cov

D4A5Q9: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus
Also see hits to annotated proteins above

 34% id,
43% cov

GCSP2_ARATH / O80988: Glycine dehydrogenase (decarboxylating) 2, mitochondrial; Glycine cleavage system P protein 2; Glycine decarboxylase 2; Glycine decarboxylase P-protein 2; AtGLDP2; Glycine dehydrogenase (aminomethyl-transferring) 2; EC 1.4.4.2 from Arabidopsis thaliana
Also see hits to annotated proteins above

 31% id,
43% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory