Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfogranum mediterraneum DSM 13871 (GCF_000429965.1)

Found 85 curated entries in PaperBLAST's database that match '2.3.1.16' as complete word(s).

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Desulfogranum mediterraneum DSM 13871, or try another query

G494_RS22310 WP_051305468.1: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

fadA / Q5P5K2: 3-keto-acyl-CoA-thiolase (EC 2.3.1.16) from Aromatoleum aromaticum

59% id,
99% cov

G3CH53: acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Ovis aries

36% id,
99% cov

PS417_10515 / A0A1N7U0F8: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Pseudomonas simiae

36% id,
99% cov

More...

G494_RS0107490 WP_028584037.1: thiolase family protein
is similar to:
PaperBLAST

PS417_10515 / A0A1N7U0F8: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Pseudomonas simiae

49% id,
99% cov

phbA / P14611: acetyl-CoA acetyltransferase subunit (EC 2.3.1.16) from Cupriavidus necator

47% id,
99% cov

SO1677: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) from Shewanella oneidensis

47% id,
99% cov

More...

G494_RS0106850 WP_028583934.1: 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

31% id,
91% cov

G494_RS0107430 WP_051305496.1: beta-ketoacyl-[acyl-carrier-protein] synthase family protein
is similar to:
PaperBLAST

Mpe_A3367 / A2SL81: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Methylibium petroleiphilum

25% id,
68% cov

Ac3H11_2994: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Acidovorax sp.

25% id,
63% cov

fadA / Q5P5K2: 3-keto-acyl-CoA-thiolase (EC 2.3.1.16) from Aromatoleum aromaticum

25% id,
58% cov

More...

G494_RS0107465 WP_028584032.1: beta-ketoacyl-[acyl-carrier-protein] synthase family protein
is similar to:
PaperBLAST

ECHB_HUMAN / P55084: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Homo sapiens
HADHB / P55084: mitochondrial trifunctional enzyme β subunit (EC 2.3.1.16) from Homo sapiens

25% id,
57% cov

ERG10 / P41338: Erg10 (EC 2.3.1.16) from Saccharomyces cerevisiae

24% id,
51% cov

fabF G494_RS0109080 WP_028584281.1: beta-ketoacyl-ACP synthase II
is similar to:
PaperBLAST

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

22% id,
64% cov

G494_RS0107495 WP_028584038.1: 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

36% id,
37% cov

fabB G494_RS0103915 WP_028583485.1: beta-ketoacyl-ACP synthase I
is similar to:
PaperBLAST

phaA / Q3IZW1: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Cereibacter sphaeroides

24% id,
45% cov

G494_RS0116145 WP_028585349.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

32% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

295433-296260 (frame +2) on NZ_KE387004.1 Desulfogranum mediterraneum DSM 13871 G494DRAFT_scaffold00001.1, whole genome shotgun sequence
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus
Also see hits to annotated proteins above

31% id,
29% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory