Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Desulfogranum mediterraneum DSM 13871 (GCF_000429965.1)

Found 14 curated entries in PaperBLAST's database that match '2.3.1.168' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Desulfogranum mediterraneum DSM 13871, or try another query

lpdA G494_RS0104025 WP_028583503.1: dihydrolipoyl dehydrogenase is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	40% id, 89% cov

G494_RS0107600 WP_051305500.1: dihydrolipoamide acetyltransferase family protein is similar to:	PaperBLAST
HP15_1631: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Marinobacter adhaerens	34% id, 99% cov
PfGW456L13_3542: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Pseudomonas fluorescens	33% id, 100% cov
SMc03203: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Sinorhizobium meliloti	34% id, 97% cov
Pf6N2E2_479: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Pseudomonas fluorescens	33% id, 100% cov
BKDC_MYCTU / O06159: Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex; Branched-chain alpha-ketoacid dehydrogenase complex component E2; BCKADH E2; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Mycobacterium tuberculosis	33% id, 99% cov
ODB2_CAEEL / Q23571: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; Branched-chain alpha-keto acid dehydrogenase complex component E2; Dihydrolipoamide branched-chain transacylase E2; EC 2.3.1.168 from Caenorhabditis elegans	32% id, 90% cov
ODB2_ARATH / Q9M7Z1: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; Branched-chain alpha-keto acid dehydrogenase complex component E2; BCE2; BCKAD-E2; BCKADE2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; Protein DARK INDUCIBLE 3; EC 2.3.1.168 from Arabidopsis thaliana	32% id, 83% cov
ODB2_BOVIN / P11181: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; Branched-chain alpha-keto acid dehydrogenase complex component E2; BCKAD-E2; BCKADE2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Bos taurus	30% id, 87% cov
Q8QHL7: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Oncorhynchus mykiss	30% id, 87% cov
ODB2_HUMAN / P11182: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; 52 kDa mitochondrial autoantigen of primary biliary cirrhosis; Branched chain 2-oxo-acid dehydrogenase complex component E2; BCOADC-E2; Branched-chain alpha-keto acid dehydrogenase complex component E2; BCKAD-E2; BCKADE2; BCKDH-E2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Homo sapiens DBT / P11182: branched-chain α-keto acid dehydrogenase complex E2 component subunit (EC 2.3.1.168) from Homo sapiens P11182: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	29% id, 87% cov
Q98UJ6: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Gallus gallus	29% id, 87% cov
BKDC_MYCTU / O06159: Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex; Branched-chain alpha-ketoacid dehydrogenase complex component E2; BCKADH E2; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Mycobacterium tuberculosis	34% id, 54% cov
SMc03203: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Sinorhizobium meliloti	37% id, 43% cov
More...

G494_RS0104020 WP_028583502.1: 2-oxo acid dehydrogenase subunit E2 is similar to:	PaperBLAST
SMc03203: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Sinorhizobium meliloti	35% id, 97% cov
HP15_1631: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Marinobacter adhaerens	34% id, 95% cov
Pf6N2E2_479: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Pseudomonas fluorescens	33% id, 97% cov
PfGW456L13_3542: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Pseudomonas fluorescens	30% id, 97% cov
Q8QHL7: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Oncorhynchus mykiss	30% id, 87% cov
ODB2_CAEEL / Q23571: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; Branched-chain alpha-keto acid dehydrogenase complex component E2; Dihydrolipoamide branched-chain transacylase E2; EC 2.3.1.168 from Caenorhabditis elegans	27% id, 90% cov
Q98UJ6: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Gallus gallus	28% id, 83% cov
ODB2_BOVIN / P11181: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; Branched-chain alpha-keto acid dehydrogenase complex component E2; BCKAD-E2; BCKADE2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Bos taurus	27% id, 83% cov
BKDC_MYCTU / O06159: Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex; Branched-chain alpha-ketoacid dehydrogenase complex component E2; BCKADH E2; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Mycobacterium tuberculosis	29% id, 78% cov
ODB2_ARATH / Q9M7Z1: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; Branched-chain alpha-keto acid dehydrogenase complex component E2; BCE2; BCKAD-E2; BCKADE2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; Protein DARK INDUCIBLE 3; EC 2.3.1.168 from Arabidopsis thaliana	27% id, 81% cov
ODB2_HUMAN / P11182: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; 52 kDa mitochondrial autoantigen of primary biliary cirrhosis; Branched chain 2-oxo-acid dehydrogenase complex component E2; BCOADC-E2; Branched-chain alpha-keto acid dehydrogenase complex component E2; BCKAD-E2; BCKADE2; BCKDH-E2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Homo sapiens DBT / P11182: branched-chain α-keto acid dehydrogenase complex E2 component subunit (EC 2.3.1.168) from Homo sapiens P11182: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	32% id, 45% cov
More...

lpdA G494_RS0107595 WP_153305792.1: dihydrolipoyl dehydrogenase is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	36% id, 90% cov

G494_RS0118460 WP_028585708.1: FAD-dependent oxidoreductase is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	30% id, 89% cov

G494_RS0116210 WP_028585357.1: NAD(P)/FAD-dependent oxidoreductase is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	27% id, 88% cov

G494_RS0100845 WP_028582990.1: FAD-dependent oxidoreductase is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	25% id, 76% cov

G494_RS0112150 WP_028584762.1: FAD-dependent oxidoreductase is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	24% id, 66% cov

trxB G494_RS0103615 WP_051305344.1: thioredoxin-disulfide reductase is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens	22% id, 49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

74964-76541 (frame +3) on NZ_KE387006.1 Desulfogranum mediterraneum DSM 13871 G494DRAFT_scaffold00006.6, whole genome shotgun sequence is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens Also see hits to annotated proteins above	29% id, 95% cov

188482-190314 (frame -2) on NZ_AUCW01000003.1 Desulfogranum mediterraneum DSM 13871 G494DRAFT_scaffold00002.2_C, whole genome shotgun sequence is similar to:	PaperBLAST
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens Also see hits to annotated proteins above	23% id, 96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory