Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfogranum mediterraneum DSM 13871 (GCF_000429965.1)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfogranum mediterraneum DSM 13871, or try another query

G494_RS0115910 WP_028585315.1: hypothetical protein
is similar to:		 PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 37% id,
96% cov

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

 37% id,
94% cov

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

 36% id,
98% cov

More...

cimA G494_RS0110500 WP_028584513.1: citramalate synthase
is similar to:		 PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 31% id,
87% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 31% id,
86% cov

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

 30% id,
89% cov

More...

leuA G494_RS0107890 WP_028584095.1: 2-isopropylmalate synthase
is similar to:		 PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 27% id,
90% cov

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

 24% id,
93% cov

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

 24% id,
84% cov

More...

G494_RS0100180 WP_028582879.1: pyruvate carboxylase subunit B
is similar to:		 PaperBLAST

HOSM_SCHPO / Q9Y823: Homocitrate synthase, mitochondrial; HCS; EC 2.3.3.14 from Schizosaccharomyces pombe
lys4 / RF|NP_596458.1: homocitrate synthase (predicted); EC 2.3.3.14 from Schizosaccharomyces pombe

 22% id,
47% cov

M1U949: homocitrate synthase (EC 2.3.3.14) from Flammulina velutipes

 21% id,
44% cov

C7C437: homocitrate synthase (EC 2.3.3.14) from Aspergillus fumigatus

 21% id,
44% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

240381-241598 (frame -2) on NZ_KE387004.1 Desulfogranum mediterraneum DSM 13871 G494DRAFT_scaffold00001.1, whole genome shotgun sequence
is similar to:		 PaperBLAST

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.
Also see hits to annotated proteins above

 37% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory