Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfogranum mediterraneum DSM 13871 (GCF_000429965.1)

Found 11 curated entries in PaperBLAST's database that match '5.1.99.1' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfogranum mediterraneum DSM 13871, or try another query

mce G494_RS0112200 WP_332307527.1: methylmalonyl-CoA epimerase
is similar to:
PaperBLAST

MCE_PYRHO / O58010: Methylmalonyl-CoA epimerase; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 from Pyrococcus horikoshii

58% id,
94% cov

Msed_0639 / A4YEG2: methylmalonyl-CoA epimerase monomer (EC 5.1.99.1) from Metallosphaera sedula
A4YEG2: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Metallosphaera sedula

36% id,
99% cov

EPI_CERS4 / Q3IZP4: Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC 5.1.99.1 from Cereibacter sphaeroides

35% id,
97% cov

More...

mce G494_RS0109355 WP_028584322.1: methylmalonyl-CoA epimerase
is similar to:
PaperBLAST

MCE_PYRHO / O58010: Methylmalonyl-CoA epimerase; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 from Pyrococcus horikoshii

55% id,
96% cov

mcee / A9WGS0: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Chloroflexus aurantiacus

40% id,
93% cov

EPI_CERS4 / Q3IZP4: Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC 5.1.99.1 from Cereibacter sphaeroides

36% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory