Curated BLAST for Genomes

 

Curated BLAST

Searching in Maridesulfovibrio bastinii DSM 16055 (GCF_000429985.1)

Found 39 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Maridesulfovibrio bastinii DSM 16055, or try another query

G496_RS0103810 WP_027178114.1: homoserine dehydrogenase
is similar to:		 PaperBLAST

DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris

 58% id,
97% cov

DHOM_NEIG1 / Q5F8J4: Homoserine dehydrogenase; HDH; HSD; NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae

 43% id,
99% cov

D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus

 40% id,
99% cov

More...

G496_RS0112150 WP_027179521.1: aspartate kinase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 38% id,
54% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

 28% id,
53% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

 28% id,
50% cov

More...

G496_RS0109865 WP_245577896.1: HesA/MoeB/ThiF family protein
is similar to:		 PaperBLAST

Q5SL04: homoserine dehydrogenase (EC 1.1.1.3) from Thermus thermophilus

 34% id,
27% cov

pyrH G496_RS0114065 WP_027179835.1: UMP kinase
is similar to:		 PaperBLAST

AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana

 37% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory