Curated BLAST for Genomes

 

Curated BLAST

Searching in Maridesulfovibrio bastinii DSM 16055 (GCF_000429985.1)

Found 4 curated entries in PaperBLAST's database that match '1.4.1.24' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Maridesulfovibrio bastinii DSM 16055, or try another query

G496_RS0100770 WP_027177587.1: 3-dehydroquinate synthase II family protein
is similar to:
PaperBLAST

DHQS_METJA / Q58646: 3-dehydroquinate synthase; DHQ synthase; 3-dehydroquinate synthase II; EC 1.4.1.24 from Methanocaldococcus jannaschii
aroB' / Q58646: dehydroquinate synthase II (EC 1.4.1.24) from Methanocaldococcus jannaschii

43% id,
87% cov

DHQS_METMP / Q6M1B0: 3-dehydroquinate synthase; DHQ synthase; 3-dehydroquinate synthase II; EC 1.4.1.24 from Methanococcus maripaludis

41% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

174804-175805 (frame +3) on NZ_AUCX01000005.1 Maridesulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00003.3_C, whole genome shotgun sequence
is similar to:
PaperBLAST

DHQS_METJA / Q58646: 3-dehydroquinate synthase; DHQ synthase; 3-dehydroquinate synthase II; EC 1.4.1.24 from Methanocaldococcus jannaschii
aroB' / Q58646: dehydroquinate synthase II (EC 1.4.1.24) from Methanocaldococcus jannaschii
Also see hits to annotated proteins above

42% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory