Curated BLAST for Genomes

 

Curated BLAST

Searching in Maridesulfovibrio bastinii DSM 16055 (GCF_000429985.1)

Found 28 curated entries in PaperBLAST's database that match '2.5.1.54' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Maridesulfovibrio bastinii DSM 16055, or try another query

G496_RS0100125 WP_027177480.1: bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II
is similar to:
PaperBLAST

Echvi_0120: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) from Echinicola vietnamensis

47% id,
98% cov

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

40% id,
86% cov

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

35% id,
89% cov

More...

kdsA G496_RS0112945 WP_027179648.1: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

32% id,
85% cov

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

32% id,
83% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

33% id,
70% cov

More...

pheA G496_RS0100775 WP_027177588.1: prephenate dehydratase
is similar to:
PaperBLAST

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

31% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory