Curated BLAST for Genomes

 

Curated BLAST

Searching in Maridesulfovibrio bastinii DSM 16055 (GCF_000429985.1)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.16' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Maridesulfovibrio bastinii DSM 16055, or try another query

glpK G496_RS0107190 WP_027178695.1: glycerol kinase GlpK
is similar to:
PaperBLAST

Echvi_0515: Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis

28% id,
25% cov

CA265_RS08625: Ribulokinase (EC 2.7.1.16) from Pedobacter sp.

28% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory