Curated BLAST for Genomes

 

Curated BLAST

Searching in Maridesulfovibrio bastinii DSM 16055 (GCF_000429985.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Maridesulfovibrio bastinii DSM 16055, or try another query

tpiA G496_RS0107365 WP_034632744.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_ARATH / P48491: Triosephosphate isomerase, cytosolic; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Arabidopsis thaliana
CTIMC / P48491: cytosolic triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana
P48491: triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana

45% id,
95% cov

A2FT29: triose-phosphate isomerase (EC 5.3.1.1) from Trichomonas vaginalis

44% id,
95% cov

A2EGX9: triose-phosphate isomerase (EC 5.3.1.1) from Trichomonas vaginalis

44% id,
95% cov

More...

G496_RS0107370 WP_027178725.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

47% id,
60% cov

G496_RS0109315 WP_027179049.1: nitronate monooxygenase
is similar to:
PaperBLAST

TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii
tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii

24% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2858-3634 (frame -1) on NZ_AUCX01000014.1 Maridesulfovibrio bastinii DSM 16055 G496DRAFT_scaffold00011.11_C, whole genome shotgun sequence
is similar to:
PaperBLAST

TPIS_ARATH / P48491: Triosephosphate isomerase, cytosolic; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Arabidopsis thaliana
CTIMC / P48491: cytosolic triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana
P48491: triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana
Also see hits to annotated proteins above

44% id,
97% cov

TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus
Also see hits to annotated proteins above

42% id,
98% cov

Q8MPF2: triose-phosphate isomerase (EC 5.3.1.1) from Tenebrio molitor
Also see hits to annotated proteins above

41% id,
99% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory