Curated BLAST for Genomes

 

Curated BLAST

Searching in Azohydromonas australica DSM 1124 (GCF_000430725.1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Azohydromonas australica DSM 1124, or try another query

H537_RS0132785 WP_029001265.1: MFS transporter
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

73% id,
100% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

75% id,
97% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

43% id,
95% cov

More...

H537_RS0124480 WP_028999949.1: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

38% id,
94% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

37% id,
94% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

37% id,
93% cov

More...

H537_RS0114180 WP_028998443.1: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

36% id,
97% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

34% id,
95% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

34% id,
91% cov

More...

H537_RS0101570 WP_051241493.1: nitrate/nitrite transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

24% id,
87% cov

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

26% id,
45% cov

H537_RS43275 WP_043458907.1: MFS transporter
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

24% id,
85% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

28% id,
61% cov

H537_RS0118050 WP_043459141.1: MFS transporter
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

23% id,
83% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

22% id,
83% cov

H537_RS0119965 WP_028999243.1: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

27% id,
45% cov

H537_RS0105015 WP_028997020.1: MDR family MFS transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

25% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory