Curated BLAST for Genomes

 

Curated BLAST

Searching in Schleiferilactobacillus shenzhenensis LY-73 (GCF_000469325.1)

Found 78 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 62 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Schleiferilactobacillus shenzhenensis LY-73, or try another query

L248_RS06710 L248_2799 WP_022529386.1: branched-chain amino acid aminotransferase
is similar to:
PaperBLAST

A0A5Q8BPF5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Lacticaseibacillus paracasei

72% id,
99% cov

Q8DTW7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Streptococcus mutans

66% id,
98% cov

Q7BPX6: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Lactococcus lactis

59% id,
99% cov

More...

L248_RS11710 L248_1434 WP_022530448.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

38% id,
94% cov

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

36% id,
97% cov

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

34% id,
96% cov

More...

L248_RS01750 L248_0379 WP_040534239.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

27% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory