Curated BLAST for Genomes

 

Curated BLAST

Searching in Schleiferilactobacillus shenzhenensis LY-73 (GCF_000469325.1)

Found 29 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Schleiferilactobacillus shenzhenensis LY-73, or try another query

gntK L248_RS06505 L248_2757 WP_022529344.1: gluconokinase
is similar to:
PaperBLAST

BWI76_RS27020: Xylulose kinase (EC 2.7.1.17) from Klebsiella michiganensis

30% id,
99% cov

XYLB_LEVBR / P35850: Xylulose kinase; Xylulokinase; EC 2.7.1.17 from Levilactobacillus brevis

30% id,
99% cov

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

31% id,
97% cov

More...

glpK L248_RS03595 L248_1842 WP_022528709.1: glycerol kinase GlpK
is similar to:
PaperBLAST

Q8NU35: xylulokinase (EC 2.7.1.17) from Corynebacterium glutamicum

27% id,
92% cov

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

26% id,
94% cov

XYLB_LEVBR / P35850: Xylulose kinase; Xylulokinase; EC 2.7.1.17 from Levilactobacillus brevis

25% id,
92% cov

More...

gatA L248_RS11975 L248_1488 WP_022530501.1: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
is similar to:
PaperBLAST

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

23% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory