Curated BLAST for Genomes

 

Curated BLAST

Searching in Schleiferilactobacillus shenzhenensis LY-73 (GCF_000469325.1)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Schleiferilactobacillus shenzhenensis LY-73, or try another query

nagB L248_RS06470 L248_2750 WP_022529337.1: glucosamine-6-phosphate deaminase
is similar to:
PaperBLAST

nagB / A3CLX4: glucosamine-6-phosphate deaminase subunit (EC 3.5.99.6) from Streptococcus sanguinis

59% id,
100% cov

GAMA_BACSU / O31458: Glucosamine-6-phosphate deaminase 2; GlcN6P deaminase 2; GNPDA 2; Glucosamine-6-phosphate isomerase 2; EC 3.5.99.6 from Bacillus subtilis

53% id,
98% cov

Shew_0815: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Shewanella loihica

48% id,
90% cov

More...

L248_RS05505 L248_2533 WP_022529134.1: SIS domain-containing protein
is similar to:
PaperBLAST

AGAS_SHESA / A0KYQ7: D-galactosamine-6-phosphate deaminase AgaS; GalN-6-P deaminase; Glucosamine-6-phosphate deaminase; GlcN-6-P deaminase; EC 3.5.99.-; EC 3.5.99.6 from Shewanella sp.

38% id,
95% cov

glmS L248_RS03250 L248_1355 WP_040534573.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

31% id,
98% cov

PGA1_c27890: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Phaeobacter inhibens

30% id,
97% cov

AO353_04455: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

29% id,
99% cov

More...

hxlB L248_RS07585 L248_2985 WP_022529570.1: 6-phospho-3-hexuloisomerase
is similar to:
PaperBLAST

CCNA_00453: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Caulobacter crescentus

32% id,
27% cov

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

37% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory