Curated BLAST for Genomes

 

Curated BLAST

Searching in Derxia gummosa DSM 723 (GCF_000482785.1)

Found 71 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Derxia gummosa DSM 723, or try another query

glyA H566_RS0104140 WP_028310448.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia

81% id,
100% cov

A0A069BAT4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia pseudomallei

81% id,
100% cov

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae

65% id,
100% cov

More...

H566_RS0104925 WP_028310558.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

75% id,
100% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

68% id,
97% cov

GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus
Q5SI56: glycine hydroxymethyltransferase (EC 2.1.2.1) from Thermus thermophilus

61% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory