Curated BLAST for Genomes

 

Curated BLAST

Searching in Derxia gummosa DSM 723 (GCF_000482785.1)

Found 20 curated entries in PaperBLAST's database that match '2.7.1.165' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Derxia gummosa DSM 723, or try another query

H566_RS0117640 WP_051379095.1: glycerate kinase
is similar to:
PaperBLAST

GCK_THEMA / Q9X1S1: D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima
Q9X1S1: glycerate 2-kinase (EC 2.7.1.165) from Thermotoga maritima

41% id,
97% cov

GCK_PYRHO / O58231: Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Pyrococcus horikoshii
O58231: glycerate 2-kinase (EC 2.7.1.165) from Pyrococcus horikoshii

38% id,
96% cov

Q703V9: glycerate 2-kinase (EC 2.7.1.165) from Thermoproteus tenax

34% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

33172-34578 (frame +1) on NZ_KI519499.1 Derxia gummosa DSM 723 H566DRAFT_scaffold00003.3, whole genome shotgun sequence
is similar to:
PaperBLAST

GCK_THEMA / Q9X1S1: D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima
Q9X1S1: glycerate 2-kinase (EC 2.7.1.165) from Thermotoga maritima
Also see hits to annotated proteins above

41% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory