Curated BLAST for Genomes

 

Curated BLAST

Searching in Derxia gummosa DSM 723 (GCF_000482785.1)

Found 6 curated entries in PaperBLAST's database that match '2.7.1.51' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Derxia gummosa DSM 723, or try another query

xylB H566_RS0106830 WP_034410950.1: xylulokinase
is similar to:
PaperBLAST

FUCK_ECOLI / P11553: L-fuculokinase; L-fuculose kinase; EC 2.7.1.51 from Escherichia coli
FucK / b2803: L-fuculokinase (EC 2.7.1.51) from Escherichia coli
fucK / P11553: L-fuculokinase (EC 2.7.1.51) from Escherichia coli

32% id,
57% cov

H566_RS24095 WP_245591319.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

BWI76_RS22930: L-fuculokinase (EC 2.7.1.51) from Klebsiella michiganensis

32% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

438965-442228 (frame -2) on NZ_AXWS01000008.1 Derxia gummosa DSM 723 H566DRAFT_scaffold00002.2_C, whole genome shotgun sequence
is similar to:
PaperBLAST

FUCK_ECOLI / P11553: L-fuculokinase; L-fuculose kinase; EC 2.7.1.51 from Escherichia coli
FucK / b2803: L-fuculokinase (EC 2.7.1.51) from Escherichia coli
fucK / P11553: L-fuculokinase (EC 2.7.1.51) from Escherichia coli
Also see hits to annotated proteins above

25% id,
94% cov

BWI76_RS22930: L-fuculokinase (EC 2.7.1.51) from Klebsiella michiganensis
Also see hits to annotated proteins above

24% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory