Curated BLAST for Genomes

 

Curated BLAST

Searching in Derxia gummosa DSM 723 (GCF_000482785.1)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Derxia gummosa DSM 723, or try another query

H566_RS0101800 WP_028310072.1: arginine/lysine/ornithine decarboxylase
is similar to:
PaperBLAST

Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni

33% id,
99% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

32% id,
99% cov

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

33% id,
96% cov

More...

lysA H566_RS0100660 WP_028309922.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

A0A1E1IR91: ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis

27% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory