Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrorhabdus chilensis DSM 12352 (GCF_000483485.1)

Found 5 curated entries in PaperBLAST's database that match '2.6.1.66' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thiomicrorhabdus chilensis DSM 12352, or try another query

B076_RS0101765 WP_028485793.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

33% id,
97% cov

B076_RS0103180 WP_028486027.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

30% id,
100% cov

B076_RS0108550 WP_028486937.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

AVTA_ECOLI / P09053: Valine--pyruvate aminotransferase; Alanine--valine transaminase; Transaminase C; EC 2.6.1.66 from Escherichia coli
AvtA / b3572: valine—pyruvate aminotransferase (EC 2.6.1.66) from Escherichia coli
avtA / P09053: valine—pyruvate aminotransferase (EC 2.6.1.66) from Escherichia coli
P09053: valine-pyruvate transaminase (EC 2.6.1.66) from Escherichia coli

40% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory