Curated BLAST for Genomes

 

Curated BLAST

Searching in Dechloromonas agitata is5 (GCF_000519045.1)

Found 1 curated entries in PaperBLAST's database that match 'acetohydroxyacid synthase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dechloromonas agitata is5, or try another query

ilvB K420_RS0116805 WP_027459069.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

70% id,
97% cov

ilvB K420_RS0111370 WP_027458176.1: acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

42% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2335999-2337765 (frame -2) on NZ_KI912532.1 Dechloromonas agitata is5 K420DRAFT_scaffold00001.1, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

41% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory