Curated BLAST for Genomes

 

Curated BLAST

Searching in Hydrogenovibrio kuenenii DSM 12350 (GCF_000526715.1)

Found 51 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Hydrogenovibrio kuenenii DSM 12350, or try another query

lpdA N745_RS0106250 WP_024851271.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
82% cov

N745_RS11835 WP_051453388.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M73: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

30% id,
44% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

23% id,
50% cov

Q5JFG2: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

25% id,
31% cov

More...

N745_RS0109415 WP_024851875.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

27% id,
43% cov

N745_RS0101925 WP_024850456.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

25% id,
41% cov

RR42_RS20125: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Cupriavidus basilensis

27% id,
34% cov

AZOBR_RS23695: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Azospirillum brasilense

26% id,
35% cov

More...

N745_RS0103505 WP_024850755.1: UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
is similar to:
PaperBLAST

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

53% id,
8% cov

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

53% id,
8% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

50% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory