Curated BLAST for Genomes

 

Curated BLAST

Searching in Haloglycomyces albus DSM 45210 (GCF_000527155.1)

Found 332 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 256 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Haloglycomyces albus DSM 45210, or try another query

HALAL_RS0100400 WP_025272094.1: glycoside hydrolase family 3 C-terminal domain-containing protein
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

31% id,
67% cov

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

41% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1379897-1381108 (frame +2) on NZ_AZUQ01000001.1 Haloglycomyces albus DSM 45210 HalalDRAFT_chromosome1.1_C, whole genome shotgun sequence
is similar to:
PaperBLAST

AAA26296.1: β-galactosidase Z (LacZ) (EC 3.2.1.23)

26% id,
21% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory