Curated BLAST for Genomes

 

Curated BLAST

Searching in Luteimonas huabeiensis HB2 (GCF_000559025.1)

Found 7 curated entries in PaperBLAST's database that match '1.1.3.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Luteimonas huabeiensis HB2, or try another query

Z164_RS0112045 WP_024890937.1: alpha-hydroxy acid oxidase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

44% id,
99% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

44% id,
97% cov

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

35% id,
94% cov

More...

lldD Z164_RS0112780 WP_024891081.1: FMN-dependent L-lactate dehydrogenase LldD
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

40% id,
96% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

26% id,
91% cov

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

26% id,
91% cov

More...

Z164_RS0101385 WP_024888963.1: alpha-hydroxy acid oxidase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

35% id,
94% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

35% id,
91% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

35% id,
43% cov

More...

guaB Z164_RS0108195 WP_024890223.1: IMP dehydrogenase
is similar to:
PaperBLAST

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

29% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory