Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyadobacter tibetensis Y620-1 (GCF_000566685.1)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Dyadobacter tibetensis Y620-1, or try another query

X939_RS0104855 WP_025762143.1: 2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

 53% id,
100% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

 51% id,
100% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

 51% id,
100% cov

More...

serA X939_RS0106485 WP_025762454.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 30% id,
100% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 29% id,
97% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 34% id,
81% cov

More...

X939_RS0109265 WP_025762978.1: D-2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 35% id,
86% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

 33% id,
89% cov

vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium

 34% id,
87% cov

More...

X939_RS0102530 WP_025761707.1: 2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 29% id,
95% cov

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 28% id,
91% cov

ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum
C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum

 25% id,
95% cov

More...

X939_RS0112415 WP_025763599.1: NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii

 31% id,
83% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 26% id,
96% cov

LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii
ldhA / OMNI|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii

 26% id,
95% cov

More...

X939_RS0106690 WP_025762494.1: D-2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 31% id,
57% cov

F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans

 30% id,
55% cov

X939_RS0118010 WP_025764677.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:		 PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 28% id,
55% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 25% id,
45% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 28% id,
27% cov

More...

X939_RS0110690 WP_025763254.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:		 PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 25% id,
56% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 25% id,
46% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 29% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory