Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyadobacter tibetensis Y620-1 (GCF_000566685.1)

Found 4 curated entries in PaperBLAST's database that match '1.3.8.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dyadobacter tibetensis Y620-1, or try another query

X939_RS0114560 WP_025764020.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

CH1CO_GEOMG / Q39QF5: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; CHeneCoA dehydrogenase; EC 1.3.8.10 from Geobacter metallireducens
Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

43% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA dehydrogenase; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

43% id,
91% cov

X939_RS0119550 WP_025764976.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

CH1CO_GEOMG / Q39QF5: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; CHeneCoA dehydrogenase; EC 1.3.8.10 from Geobacter metallireducens
Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

39% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA dehydrogenase; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

36% id,
93% cov

X939_RS0119810 WP_025765020.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

CH1CO_GEOMG / Q39QF5: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; CHeneCoA dehydrogenase; EC 1.3.8.10 from Geobacter metallireducens
Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

34% id,
97% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA dehydrogenase; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

33% id,
90% cov

X939_RS0112565 WP_025763627.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

CH1CO_GEOMG / Q39QF5: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; CHeneCoA dehydrogenase; EC 1.3.8.10 from Geobacter metallireducens
Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

30% id,
98% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA dehydrogenase; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

30% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory