Curated BLAST for Genomes

 

Curated BLAST

Searching in Skermanella stibiiresistens SB22 (GCF_000576635.1)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Skermanella stibiiresistens SB22, or try another query

N825_RS03240 N825_18685 WP_037446948.1: ROK family protein
is similar to:
PaperBLAST

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

53% id,
99% cov

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

53% id,
97% cov

B1VZT1: glucokinase (EC 2.7.1.2) from Streptomyces griseus

32% id,
98% cov

More...

N825_RS19175 N825_08720 WP_037455537.1: ROK family protein
is similar to:
PaperBLAST

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

52% id,
99% cov

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

54% id,
95% cov

N825_RS08505 N825_30470 WP_037449764.1: glucokinase
is similar to:
PaperBLAST

GLK_ECOLI / P0A6V8: Glucokinase; Glucose kinase; EC 2.7.1.2 from Escherichia coli
Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli

48% id,
98% cov

PS417_22685: Glucokinase (EC 2.7.1.2) from Pseudomonas simiae

38% id,
98% cov

G4T1H4: glucokinase (EC 2.7.1.2) from Methylotuvimicrobium alcaliphilum

30% id,
98% cov

More...

N825_RS12890 N825_36665 WP_051512260.1: ROK family transcriptional regulator
is similar to:
PaperBLAST

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

32% id,
99% cov

glcK / GI|1303865: glucokinase; EC 2.7.1.2 from Bacillus subtilis

30% id,
97% cov

GLK_BACSU / P54495: Glucokinase; Glucose kinase; EC 2.7.1.2 from Bacillus subtilis
P54495: glucokinase (EC 2.7.1.2) from Bacillus subtilis

30% id,
97% cov

More...

N825_RS09445 N825_31435 WP_198038246.1: ROK family protein
is similar to:
PaperBLAST

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

29% id,
98% cov

GLK_THEMA / Q9X1I0: Glucokinase; ATP-dependent glucokinase; ATP-GLK; Glucose kinase; EC 2.7.1.2 from Thermotoga maritima

29% id,
98% cov

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium

29% id,
96% cov

More...

N825_RS14330 N825_03445 WP_037452838.1: ROK family transcriptional regulator
is similar to:
PaperBLAST

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium

28% id,
95% cov

GLK_BACSU / P54495: Glucokinase; Glucose kinase; EC 2.7.1.2 from Bacillus subtilis
P54495: glucokinase (EC 2.7.1.2) from Bacillus subtilis

27% id,
94% cov

glcK / GI|1303865: glucokinase; EC 2.7.1.2 from Bacillus subtilis

27% id,
94% cov

More...

N825_RS13085 N825_36865 WP_037452159.1: ROK family transcriptional regulator
is similar to:
PaperBLAST

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium

25% id,
98% cov

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

23% id,
99% cov

GLK_BACSU / P54495: Glucokinase; Glucose kinase; EC 2.7.1.2 from Bacillus subtilis
P54495: glucokinase (EC 2.7.1.2) from Bacillus subtilis

26% id,
76% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory