Curated BLAST for Genomes

 

Curated BLAST

Searching in Skermanella stibiiresistens SB22 (GCF_000576635.1)

Found 11 curated entries in PaperBLAST's database that match '3.1.1.17' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Skermanella stibiiresistens SB22, or try another query

N825_RS14960 N825_04160 WP_037453274.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

39% id,
99% cov

RGN_HUMAN / Q15493: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens
Q15493: gluconolactonase (EC 3.1.1.17) from Homo sapiens

36% id,
99% cov

RGN_MOUSE / Q64374: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Mus musculus
Q64374: gluconolactonase (EC 3.1.1.17) from Mus musculus

35% id,
99% cov

More...

N825_RS02215 N825_02310 WP_037446124.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

37% id,
99% cov

RGN_RAT / Q03336: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Rattus norvegicus
Rgn / Q03336: gluconolactonase (EC 3.1.1.17) from Rattus norvegicus

36% id,
99% cov

RGN_HUMAN / Q15493: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens
Q15493: gluconolactonase (EC 3.1.1.17) from Homo sapiens

36% id,
99% cov

More...

N825_RS25455 N825_09500 WP_037458282.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

37% id,
98% cov

RGN_MOUSE / Q64374: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Mus musculus
Q64374: gluconolactonase (EC 3.1.1.17) from Mus musculus

35% id,
98% cov

RGN_HUMAN / Q15493: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens
Q15493: gluconolactonase (EC 3.1.1.17) from Homo sapiens

35% id,
98% cov

More...

N825_RS06535 N825_24995 WP_051511633.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

32% id,
98% cov

RGN_MOUSE / Q64374: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Mus musculus
Q64374: gluconolactonase (EC 3.1.1.17) from Mus musculus

29% id,
98% cov

RGN_HUMAN / Q15493: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens
Q15493: gluconolactonase (EC 3.1.1.17) from Homo sapiens

28% id,
98% cov

N825_RS14430 N825_03550 WP_037452878.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

GNL_ZYMMO / Q01578: Gluconolactonase; D-glucono-delta-lactone lactonohydrolase; EC 3.1.1.17 from Zymomonas mobilis
gnl / Q01578: gluconolactonase subunit (EC 3.1.1.17) from Zymomonas mobilis
Q01578: gluconolactonase (EC 3.1.1.17) from Zymomonas mobilis

32% id,
80% cov

N825_RS32965 N825_29280 WP_157619710.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

GNL_ZYMMO / Q01578: Gluconolactonase; D-glucono-delta-lactone lactonohydrolase; EC 3.1.1.17 from Zymomonas mobilis
gnl / Q01578: gluconolactonase subunit (EC 3.1.1.17) from Zymomonas mobilis
Q01578: gluconolactonase (EC 3.1.1.17) from Zymomonas mobilis

30% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory