Curated BLAST for Genomes

 

Curated BLAST

Searching in Skermanella stibiiresistens SB22 (GCF_000576635.1)

Found 10 curated entries in PaperBLAST's database that match '5.4.2.6' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Skermanella stibiiresistens SB22, or try another query

N825_RS22400 N825_13470 WP_037457181.1: HAD family phosphatase
is similar to:
PaperBLAST

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

27% id,
100% cov

PGMB_MYCTU / P9WKZ7: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Mycobacterium tuberculosis

27% id,
91% cov

PGMB_BACSU / O06995: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Bacillus subtilis

36% id,
43% cov

More...

N825_RS19150 N825_08695 WP_037455530.1: HAD family hydrolase
is similar to:
PaperBLAST

PGMB_MYCTU / P9WKZ7: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Mycobacterium tuberculosis

27% id,
91% cov

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

25% id,
89% cov

N825_RS01870 N825_01950 WP_037446078.1: HAD family hydrolase
is similar to:
PaperBLAST

PGMB_ECOLI / P77366: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Escherichia coli
ycjU / P77366: β-phosphoglucomutase (EC 5.4.2.6) from Escherichia coli
P77366: beta-Phosphoglucomutase (EC 5.4.2.6) from Escherichia coli

28% id,
84% cov

N825_RS19180 N825_08725 WP_037455539.1: HAD family hydrolase
is similar to:
PaperBLAST

PGMB_BACSU / O06995: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Bacillus subtilis

28% id,
84% cov

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

25% id,
83% cov

PGMB_MYCTU / P9WKZ7: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Mycobacterium tuberculosis

37% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory