Curated BLAST for Genomes

 

Curated BLAST

Searching in Snodgrassella alvi wkB2 (GCF_000600005.1)

Found 14 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Snodgrassella alvi wkB2, or try another query

ilvD SALWKB2_RS03885 SALWKB2_0765 WP_025330372.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

31% id,
93% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

34% id,
63% cov

ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense
Q1JUQ1: L-Arabinonate dehydratase (EC 4.2.1.25) from Azospirillum brasilense

32% id,
64% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory