Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurihydrogenibium subterraneum DSM 15120 (GCF_000619805.1)

Found 7 curated entries in PaperBLAST's database that match '1.1.1.87' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfurihydrogenibium subterraneum DSM 15120, or try another query

leuB Q385_RS0106320 WP_028950858.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

hicdh / Q5SIJ1: homoisocitrate dehydrogenase subunit (EC 1.1.1.87) from Thermus thermophilus
Q5SIJ1: homoisocitrate dehydrogenase (EC 1.1.1.87) from Thermus thermophilus

41% id,
99% cov

AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Homo(2)-isocitrate/homo(3)-isocitrate dehydrogenase; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC 1.1.1.87; EC 1.1.1.- from Methanocaldococcus jannaschii
aksF / Q58991: NAD-dependent threo-isocitrate dehydrogenase (EC 1.1.1.87) from Methanocaldococcus jannaschii

39% id,
98% cov

LYS12_YEAST / P40495: Homoisocitrate dehydrogenase, mitochondrial; HIcDH; EC 1.1.1.87 from Saccharomyces cerevisiae
P40495: homoisocitrate dehydrogenase (EC 1.1.1.87) from Saccharomyces cerevisiae

39% id,
95% cov

More...

pdxA Q385_RS0105465 WP_028950701.1: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA
is similar to:
PaperBLAST

LYS12_SCHPO / O14104: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Schizosaccharomyces pombe

34% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory