Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurihydrogenibium subterraneum DSM 15120 (GCF_000619805.1)

Found 21 curated entries in PaperBLAST's database that match '1.2.1.79' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sulfurihydrogenibium subterraneum DSM 15120, or try another query

Q385_RS0106445 WP_028950880.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

A9SS48: succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Physcomitrium patens

39% id,
95% cov

GABD_BACSU / P94428: Succinate-semialdehyde dehydrogenase [NADP(+)]; SSDH; EC 1.2.1.79 from Bacillus subtilis

37% id,
100% cov

Q97XA5: succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79); glyceraldehyde-3-phosphate dehydrogenase (NADP+) (EC 1.2.1.9) from Saccharolobus solfataricus

36% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

144164-145624 (frame -3) on NZ_JHUV01000011.1 Sulfurihydrogenibium subterraneum DSM 15120 Q385DRAFT_scaffold00004.4_C, whole genome shotgun sequence
is similar to:
PaperBLAST

A9SS48: succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Physcomitrium patens
Also see hits to annotated proteins above

39% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory