Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurihydrogenibium subterraneum DSM 15120 (GCF_000619805.1)

Found 5 curated entries in PaperBLAST's database that match 'arginosuccinate lyase' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfurihydrogenibium subterraneum DSM 15120, or try another query

argH Q385_RS0107605 WP_028951092.1: argininosuccinate lyase
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

42% id,
93% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

38% id,
87% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

35% id,
87% cov

More...

purB Q385_RS0103860 WP_028950401.1: adenylosuccinate lyase
is similar to:
PaperBLAST

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

25% id,
82% cov

N515DRAFT_3770: arginosuccinate lyase (EC 4.3.2.1) from Dyella japonica

24% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory