Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiothrix lacustris DSM 21227 (GCF_000621325.1)

Found 7 curated entries in PaperBLAST's database that match '1.1.3.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thiothrix lacustris DSM 21227, or try another query

Q394_RS0115755 WP_028490099.1: alpha-hydroxy acid oxidase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

48% id,
97% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

43% id,
93% cov

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

33% id,
92% cov

More...

guaB Q394_RS0103235 WP_028488014.1: IMP dehydrogenase
is similar to:
PaperBLAST

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

24% id,
53% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

24% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory