Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiothrix lacustris DSM 21227 (GCF_000621325.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.5.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thiothrix lacustris DSM 21227, or try another query

Q394_RS0105725 WP_051542880.1: PQQ-dependent sugar dehydrogenase
is similar to:
PaperBLAST

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus

37% id,
94% cov

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

37% id,
84% cov

Q394_RS0107820 WP_028488787.1: methanol/ethanol family PQQ-dependent dehydrogenase
is similar to:
PaperBLAST

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

26% id,
52% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

26% id,
49% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

26% id,
32% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory