Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiothrix lacustris DSM 21227 (GCF_000621325.1)

Found 15 curated entries in PaperBLAST's database that match '4.1.1.43' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thiothrix lacustris DSM 21227, or try another query

Q394_RS0103325 WP_028488024.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

29% id,
56% cov

pdc / Q5NYJ8: phenylpyruvate decarboxylase (EC 4.1.1.43) from Aromatoleum aromaticum

27% id,
57% cov

ilvB Q394_RS0102400 WP_028487865.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ipdC / P51852: phenylpyruvate decarboxylase (EC 4.1.1.43) from Azospirillum brasilense

24% id,
67% cov

dxs Q394_RS19825 WP_038141147.1: 1-deoxy-D-xylulose-5-phosphate synthase
is similar to:
PaperBLAST

ppdcα / A0A222AKA3: phenylpyruvate decarboxylase α subunit (EC 4.1.1.43) from Streptomyces virginiae
A0A222AKA3: phenylpyruvate decarboxylase (EC 4.1.1.43) from Streptomyces virginiae

37% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory