Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacillus altitudinis 41KF2b (GCF_000691145.1)

Found 13 curated entries in PaperBLAST's database that match '1.1.2.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacillus altitudinis 41KF2b, or try another query

glcD BA79_RS18270 BA79_18477 WP_035391821.1: glycolate oxidase subunit GlcD
is similar to:
PaperBLAST

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

34% id,
95% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

33% id,
91% cov

W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta

33% id,
82% cov

More...

BA79_RS00405 BA79_00415 WP_035700263.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

21% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory