Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacillus altitudinis 41KF2b (GCF_000691145.1)

Found 19 curated entries in PaperBLAST's database that match '1.1.99.6' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Bacillus altitudinis 41KF2b, or try another query

glcD BA79_RS18270 BA79_18477 WP_035391821.1: glycolate oxidase subunit GlcD
is similar to:
PaperBLAST

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

40% id,
90% cov

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

36% id,
97% cov

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

35% id,
97% cov

More...

BA79_RS18275 BA79_18482 WP_035704441.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

35% id,
91% cov

Psest_3839: D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

33% id,
96% cov

PGA1_c29700: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Phaeobacter inhibens

32% id,
94% cov

More...

BA79_RS00405 BA79_00415 WP_035700263.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

Q974L0: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Sulfurisphaera tokodaii

24% id,
75% cov

BA79_RS03520 BA79_03575 WP_035700904.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

Psest_3839: D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

27% id,
58% cov

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

28% id,
53% cov

PGA1_c29700: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Phaeobacter inhibens

26% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory