Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacillus altitudinis 41KF2b (GCF_000691145.1)

Found 31 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Bacillus altitudinis 41KF2b, or try another query

BA79_RS07620 BA79_07756 WP_007501728.1: acetate kinase
is similar to:
PaperBLAST

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis

87% id,
100% cov

ACKA_METTE / P38502: Acetate kinase; Acetokinase; EC 2.7.2.1 from Methanosarcina thermophila
P38502: acetate kinase (EC 2.7.2.1) from Methanosarcina thermophila

57% id,
97% cov

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

56% id,
99% cov

More...

purK BA79_RS14570 BA79_14778 WP_035703531.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

27% id,
91% cov

buk BA79_RS11105 BA79_11283 WP_026050108.1: butyrate kinase
is similar to:
PaperBLAST

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

28% id,
87% cov

Q9F1X7: acetate kinase (EC 2.7.2.1) from Fructilactobacillus sanfranciscensis

26% id,
83% cov

ACKA_ECOLI / P0A6A3: Acetate kinase; Acetokinase; EC 2.7.2.1 from Escherichia coli
AckA / b2296: acetate kinase (EC 2.7.2.15; EC 2.7.2.1; EC 2.7.2.7; EC 2.7.2.14) from Escherichia coli
ackA / RF|NP_416799: acetate kinase; EC 2.7.2.1 from Escherichia coli
P0A6A5: acetate kinase (EC 2.7.2.1) from Escherichia coli
P0A6A3: acetate kinase (EC 2.7.2.1) from Escherichia coli

30% id,
39% cov

pyc BA79_RS02075 BA79_02135 WP_035700637.1: pyruvate carboxylase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

23% id,
71% cov

BA79_RS17485 BA79_17735 WP_035704213.1: D-alanine--D-alanine ligase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

31% id,
42% cov

BA79_RS12725 BA79_12940 WP_008342095.1: cupin domain-containing protein
is similar to:
PaperBLAST

EUTQ_CLOD6 / Q187N7: Acetate kinase EutQ; Ethanolamine utilization protein EutQ; EC 2.7.2.1 from Clostridioides difficile

41% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

44393-45547 (frame +2) on NZ_ASJC01000009.1 Bacillus altitudinis 41KF2b contig9, whole genome shotgun sequence
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
Also see hits to annotated proteins above

26% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory