Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacillus altitudinis 41KF2b (GCF_000691145.1)

Found 22 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Bacillus altitudinis 41KF2b, or try another query

gcvH BA79_RS04965 BA79_05057 WP_008347039.1: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis

89% id,
100% cov

GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus

69% id,
100% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

47% id,
99% cov

More...

BA79_RS01960 BA79_02015 WP_008345100.1: dihydrolipoamide acetyltransferase family protein
is similar to:
PaperBLAST

GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus

34% id,
69% cov

BA79_RS17610 BA79_17860 WP_008346885.1: dihydrolipoamide acetyltransferase family protein
is similar to:
PaperBLAST

GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae

39% id,
49% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

37% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory