Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira pelophila DSM 1534 (GCF_000711195.1)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thiomicrospira pelophila DSM 1534, or try another query

N746_RS0105385 WP_029934611.1: homoserine dehydrogenase
is similar to:		 PaperBLAST

DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae

 49% id,
100% cov

Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis

 43% id,
97% cov

DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris

 43% id,
94% cov

More...

N746_RS0103890 WP_029934061.1: aspartate kinase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 43% id,
54% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

 29% id,
53% cov

BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron

 29% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory