Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira pelophila DSM 1534 (GCF_000711195.1)

Found 80 curated entries in PaperBLAST's database that match '2.5.1.47' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thiomicrospira pelophila DSM 1534, or try another query

cysM N746_RS0105985 WP_029934801.1: cysteine synthase CysM
is similar to:
PaperBLAST

P29848: S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) (EC 2.5.1.144); cysteine synthase (EC 2.5.1.47) from Salmonella enterica

67% id,
97% cov

CYSM_ECOLI / P16703: Cysteine synthase B; CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B; EC 2.5.1.47 from Escherichia coli
CysM / b2421: cysteine synthase B (EC 2.5.1.47; EC 2.5.1.144; EC 4.4.1.1; EC 4.4.1.28) from Escherichia coli
cysM / P16703: cysteine synthase B (EC 2.5.1.47; EC 2.5.1.144; EC 4.4.1.1) from Escherichia coli

65% id,
97% cov

A2GMG5: cysteine synthase (EC 2.5.1.47) from Trichomonas vaginalis

44% id,
100% cov

More...

N746_RS0100205 WP_029933346.1: aminotransferase class V-fold PLP-dependent enzyme
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

48% id,
98% cov

ilvA N746_RS0107200 WP_029935274.1: threonine ammonia-lyase, biosynthetic
is similar to:
PaperBLAST

CYSK_BACSU / P37887: Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; Superoxide-inducible protein 11; SOI11; EC 2.5.1.47 from Bacillus subtilis
P37887: cysteine synthase (EC 2.5.1.47) from Bacillus subtilis

26% id,
93% cov

CYSD1_ARATH / Q9S6Z7: Bifunctional L-3-cyanoalanine synthase/cysteine synthase D1; Beta-substituted Ala synthase 4;1; ARAth-Bsas4;1; Cysteine synthase D1; AtcysD1; O-acetylserine (thiol)-lyase 3; EC 2.5.1.47; EC 4.4.1.9 from Arabidopsis thaliana

26% id,
89% cov

Cy-OASTL / A0A2Z6G0Q7: mimosine synthase monomer (EC 2.5.1.47; EC 2.5.1.52) from Leucaena leucocephala
A0A2Z6G0Q7: cysteine synthase (EC 2.5.1.47) from Leucaena leucocephala

26% id,
88% cov

More...

N746_RS0103335 WP_029933947.1: O-succinylhomoserine sulfhydrylase
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

39% id,
50% cov

METW_YEAST / Q12198: Homocysteine/cysteine synthase; Hydrogen sulfide utilizing 1; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

24% id,
68% cov

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

38% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory