Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira pelophila DSM 1534 (GCF_000711195.1)

Found 52 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Thiomicrospira pelophila DSM 1534, or try another query

serB N746_RS0107475 WP_029935371.1: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_POLSJ / Q12A06: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Polaromonas sp.

50% id,
97% cov

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

49% id,
93% cov

SERB_IDILO / Q5QXU4: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Idiomarina loihiensis

48% id,
91% cov

More...

N746_RS10520 WP_051678417.1: EAL domain-containing protein
is similar to:
PaperBLAST

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

22% id,
95% cov

N746_RS0103050 WP_051678483.1: heavy metal translocating P-type ATPase
is similar to:
PaperBLAST

B6YX36: phosphoserine phosphatase (EC 3.1.3.3) from Thermococcus onnurineus

26% id,
77% cov

N746_RS0106405 WP_029934975.1: HAD family hydrolase
is similar to:
PaperBLAST

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

22% id,
90% cov

SERB_ECOLI / P0AGB0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Escherichia coli
SerB / b4388: phosphoserine phosphatase (EC 3.1.3.3) from Escherichia coli
serB: phosphoserine phosphatase; EC 3.1.3.3 from Escherichia coli
serB / P0AGB0: phosphoserine phosphatase (EC 3.1.3.3) from Escherichia coli

25% id,
48% cov

SERB_STRCO / Q9S281: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptomyces coelicolor

26% id,
37% cov

N746_RS0100810 WP_029933463.1: Cof-type HAD-IIB family hydrolase
is similar to:
PaperBLAST

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

39% id,
27% cov

yrfG N746_RS0108185 WP_029935646.1: GMP/IMP nucleotidase
is similar to:
PaperBLAST

PSP_BACSU / P94512: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Bacillus subtilis

23% id,
37% cov

N746_RS0102875 WP_029933858.1: PAS domain S-box protein
is similar to:
PaperBLAST

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

26% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory