Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira pelophila DSM 1534 (GCF_000711195.1)

Found 23 curated entries in PaperBLAST's database that match '3.6.1.31' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thiomicrospira pelophila DSM 1534, or try another query

hisE N746_RS0110280 WP_029936328.1: phosphoribosyl-ATP diphosphatase
is similar to:
PaperBLAST

Pf1N1B4_1566: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas fluorescens

64% id,
45% cov

AO356_09525: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas fluorescens
Pf6N2E2_3783: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas fluorescens

64% id,
45% cov

PS417_01850: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas simiae

62% id,
45% cov

More...

N746_RS0100005 WP_029933306.1: phosphoribosyl-ATP diphosphatase
is similar to:
PaperBLAST

AO356_09525: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas fluorescens
Pf6N2E2_3783: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas fluorescens

61% id,
46% cov

Psest_3944: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas stutzeri

59% id,
48% cov

PS417_01850: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas simiae

59% id,
46% cov

More...

hisI N746_RS0101795 WP_029933655.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

HisE / b2026: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
hisI / P06989: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli

46% id,
48% cov

HIS2_ARATH / O82768: Histidine biosynthesis bifunctional protein hisIE, chloroplastic; Protein HISTIDINE BIOSYNTHESIS 2; EC 3.5.4.19; EC 3.6.1.31 from Arabidopsis thaliana
At-IE / O82768: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19; EC 3.6.1.31) from Arabidopsis thaliana

38% id,
38% cov

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

36% id,
11% cov

hisD N746_RS0103745 WP_029934024.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

36% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory