Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira pelophila DSM 1534 (GCF_000711195.1)

Found 31 curated entries in PaperBLAST's database that match '4.3.1.19' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thiomicrospira pelophila DSM 1534, or try another query

ilvA N746_RS0107200 WP_029935274.1: threonine ammonia-lyase, biosynthetic
is similar to:
PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

54% id,
98% cov

THDH_YEAST / P00927: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Saccharomyces cerevisiae

48% id,
89% cov

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

50% id,
83% cov

More...

trpB N746_RS0103305 WP_029933941.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

26% id,
74% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

27% id,
69% cov

CA265_RS15860: threonine deaminase (EC 4.3.1.19) from Pedobacter sp.

27% id,
42% cov

trpB N746_RS0107910 WP_029935536.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

25% id,
68% cov

A0QX60: threonine ammonia-lyase (EC 4.3.1.19) from Mycolicibacterium smegmatis

24% id,
69% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

28% id,
47% cov

cysM N746_RS0105985 WP_029934801.1: cysteine synthase CysM
is similar to:
PaperBLAST

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

29% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory