Curated BLAST for Genomes

 

Curated BLAST

Searching in Hydrogenovibrio marinus DSM 11271 (GCF_000711315.1)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Hydrogenovibrio marinus DSM 11271, or try another query

argF P166_RS0101105 WP_029907887.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

OTCA_PSEAE / P11724: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

62% id,
97% cov

OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi

62% id,
97% cov

HSERO_RS07185: Ornithine carbamoyltransferase (EC 2.1.3.3) from Herbaspirillum seropedicae

55% id,
98% cov

More...

P166_RS0106890 WP_029910264.1: aspartate carbamoyltransferase catalytic subunit
is similar to:
PaperBLAST

OTC_MORAB / Q9K4Y9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi

26% id,
100% cov

Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti

26% id,
98% cov

OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum
arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum
Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum

26% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory