Curated BLAST for Genomes

 

Curated BLAST

Searching in Hydrogenovibrio marinus DSM 11271 (GCF_000711315.1)

Found 24 curated entries in PaperBLAST's database that match '2.6.1.5' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Hydrogenovibrio marinus DSM 11271, or try another query

hemL P166_RS0111940 WP_029913118.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

34% id,
91% cov

P166_RS0110670 WP_029912413.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

ISS1_ARATH / Q9C969: Aromatic aminotransferase ISS1; Methionine aminotransferase ISS1; Phenylalanine aminotransferase ISS1; Protein INDOLE SEVERE SENSITIVE 1; Protein REVERSAL OF SAV3 PHENOTYPE 1; Tryptophan aminotransferase ISS1; Tyrosine aminotransferase ISS1; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.88 from Arabidopsis thaliana

28% id,
89% cov

A0A0A7DQ59: tyrosine transaminase (EC 2.6.1.5) from Scutellaria baicalensis

24% id,
93% cov

A0A2K9VNZ8: tyrosine transaminase (EC 2.6.1.5) from Malus domestica

23% id,
95% cov

More...

P166_RS0100205 WP_029907567.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

ATTY_MOUSE / Q8QZR1: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Mus musculus
Q8QZR1: tyrosine transaminase (EC 2.6.1.5) from Mus musculus

26% id,
88% cov

ATTY_RAT / P04694: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Rattus norvegicus

26% id,
87% cov

ATTY_HUMAN / P17735: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Homo sapiens

26% id,
81% cov

P166_RS0101110 WP_035629177.1: acetylornithine transaminase
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

25% id,
88% cov

P166_RS0103235 WP_051622951.1: PLP-dependent aminotransferase family protein
is similar to:
PaperBLAST

A0A0A7DQ59: tyrosine transaminase (EC 2.6.1.5) from Scutellaria baicalensis

26% id,
88% cov

ATTY_RAT / P04694: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Rattus norvegicus

24% id,
90% cov

ATTY_HUMAN / P17735: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Homo sapiens

25% id,
80% cov

More...

alaC P166_RS0104170 WP_029909044.1: alanine transaminase
is similar to:
PaperBLAST

ATTY_TRYCR / P33447: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Trypanosoma cruzi

26% id,
84% cov

ectB P166_RS0108225 WP_029911017.1: diaminobutyrate--2-oxoglutarate transaminase
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

28% id,
75% cov

P166_RS0106405 WP_029910020.1: PatB family C-S lyase
is similar to:
PaperBLAST

Q67Y55: tyrosine transaminase (EC 2.6.1.5) from Arabidopsis thaliana

25% id,
55% cov

hisC P166_RS0103890 WP_029908945.1: histidinol-phosphate transaminase
is similar to:
PaperBLAST

ATTY_MOUSE / Q8QZR1: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Mus musculus
Q8QZR1: tyrosine transaminase (EC 2.6.1.5) from Mus musculus

28% id,
48% cov

ATTY_HUMAN / P17735: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Homo sapiens

26% id,
48% cov

ATTY_RAT / P04694: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Rattus norvegicus

26% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1652772-1654127 (frame -2) on NZ_JOML01000002.1 Hydrogenovibrio marinus DSM 11271 P166DRAFT_scf7180000000008_quiver.2_C, whole genome shotgun sequence
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus
Also see hits to annotated proteins above

27% id,
83% cov

1278856-1280055 (frame -1) on NZ_JOML01000002.1 Hydrogenovibrio marinus DSM 11271 P166DRAFT_scf7180000000008_quiver.2_C, whole genome shotgun sequence
is similar to:
PaperBLAST

A0A0A7DPK0: tyrosine transaminase (EC 2.6.1.5) from Scutellaria baicalensis

20% id,
73% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory