Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Hydrogenovibrio marinus DSM 11271 (GCF_000711315.1)

Found 23 curated entries in PaperBLAST's database that match '6.1.1.23' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Hydrogenovibrio marinus DSM 11271, or try another query

aspS P166_RS0102510 WP_169736214.1: aspartate--tRNA ligase is similar to:	PaperBLAST
SYDND_PSEAE / Q51422: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa	63% id, 99% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	59% id, 100% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	53% id, 99% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	53% id, 99% cov
SYDND_HELPY / P56459: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori	51% id, 100% cov
Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus	52% id, 98% cov
DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris	51% id, 95% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	47% id, 99% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	44% id, 99% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	48% id, 91% cov
PGA1_c24530: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Phaeobacter inhibens	41% id, 98% cov
Dshi_2633: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Dinoroseobacter shibae	41% id, 99% cov
CCNA_01969: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus	40% id, 99% cov
SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei	36% id, 65% cov
SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus	33% id, 69% cov
SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum	33% id, 66% cov
SYDND_THET8 / Q5SIC2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase 2; AspRS2; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Thermus thermophilus	32% id, 62% cov
SYDND_DEIRA / Q9RVH4: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase 2; AspRS2; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Deinococcus radiodurans aspS2 / Q9RVH4: aspartyl-tRNA synthetase, non-discriminating (EC 6.1.1.23) from Deinococcus radiodurans	29% id, 65% cov
erdS / Q4WKG3: aspartate--tRNA ligase/ergosteryl-3β-O-L-aspartate synthase (EC 6.1.1.23; EC 2.3.2.37) from Aspergillus fumigatus	26% id, 30% cov
SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum	38% id, 19% cov
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lysS P166_RS0101930 WP_029908230.1: lysine--tRNA ligase is similar to:	PaperBLAST
SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum	26% id, 97% cov
SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei	26% id, 94% cov
SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus	25% id, 98% cov
C4LZN0: aspartate-tRNA ligase (EC 6.1.1.12); aspartate-tRNAAsn ligase (EC 6.1.1.23) from Entamoeba histolytica	25% id, 90% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	27% id, 54% cov
SYDND_HELPY / P56459: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori	29% id, 47% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	27% id, 49% cov
erdS / Q4WKG3: aspartate--tRNA ligase/ergosteryl-3β-O-L-aspartate synthase (EC 6.1.1.23; EC 2.3.2.37) from Aspergillus fumigatus	23% id, 56% cov
Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus	27% id, 46% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	27% id, 43% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	25% id, 45% cov
SYDND_HELPY / P56459: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori	24% id, 39% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	26% id, 34% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	23% id, 33% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	24% id, 30% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	32% id, 22% cov
DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris	39% id, 14% cov
PGA1_c24530: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Phaeobacter inhibens	31% id, 17% cov
SYDND_PSEAE / Q51422: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa	33% id, 15% cov
Dshi_2633: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Dinoroseobacter shibae	32% id, 15% cov
CCNA_01969: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus	32% id, 15% cov
More...

epmA P166_RS0100285 WP_029907600.1: EF-P lysine aminoacylase EpmA is similar to:	PaperBLAST
SYDND_PSEAE / Q51422: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa	28% id, 24% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	27% id, 25% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	27% id, 24% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	29% id, 22% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	25% id, 25% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	23% id, 24% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	27% id, 18% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory