Curated BLAST for Genomes

 

Curated BLAST

Searching in Hydrogenovibrio marinus DSM 11271 (GCF_000711315.1)

Found 6 curated entries in PaperBLAST's database that match '6.1.1.24' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Hydrogenovibrio marinus DSM 11271, or try another query

glnS P166_RS0102840 WP_029908557.1: glutamine--tRNA ligase
is similar to:
PaperBLAST

P00962: glutamine-tRNA ligase (EC 6.1.1.18); glutamate-tRNAGln ligase (EC 6.1.1.24) from Escherichia coli

69% id,
100% cov

Q8IDD3: glutamate-tRNAGln ligase (EC 6.1.1.24) from Plasmodium falciparum

23% id,
56% cov

CCNA_01982: glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) from Caulobacter crescentus

26% id,
41% cov

More...

gltX P166_RS0104020 WP_029908991.1: glutamate--tRNA ligase
is similar to:
PaperBLAST

CCNA_01982: glutamyl-tRNA(Glx) synthetase (EC 6.1.1.24) from Caulobacter crescentus

42% id,
97% cov

gltX / P22250: glutamyl-tRNAGlx synthetase (EC 6.1.1.17; EC 6.1.1.24) from Bacillus subtilis

37% id,
99% cov

Q9X2I8: glutamate-tRNAGln ligase (EC 6.1.1.24) from Thermotoga maritima

36% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory