Curated BLAST for Genomes

 

Curated BLAST

Searching in Hydrogenovibrio marinus DSM 11271 (GCF_000711315.1)

Found 5 curated entries in PaperBLAST's database that match 'anthranilate synthase alpha subunit' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Hydrogenovibrio marinus DSM 11271, or try another query

trpE P166_RS0107545 WP_029910648.1: anthranilate synthase component I
is similar to:
PaperBLAST

trpE / AAA25223.1: anthranilate synthase alpha subunit from Lactococcus lactis

43% id,
98% cov

ASA1_ORYSJ / Q94GF1: Anthranilate synthase alpha subunit 1, chloroplastic; OsASA1; EC 4.1.3.27 from Oryza sativa

39% id,
90% cov

TRPE_ARATH / P32068: Anthranilate synthase alpha subunit 1, chloroplastic; Anthranilate synthase component 1-1; Anthranilate synthase component I-1; Protein A-METHYL TRYPTOPHAN RESISTANT 1; Protein JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1; Protein TRYPTOPHAN BIOSYNTHESIS 5; Protein WEAK ETHYLENE INSENSITIVE 2; EC 4.1.3.27 from Arabidopsis thaliana

38% id,
88% cov

More...

P166_RS0106070 WP_081822704.1: aminodeoxychorismate synthase component I
is similar to:
PaperBLAST

trpE / AAA25223.1: anthranilate synthase alpha subunit from Lactococcus lactis

34% id,
94% cov

ASA1_ORYSJ / Q94GF1: Anthranilate synthase alpha subunit 1, chloroplastic; OsASA1; EC 4.1.3.27 from Oryza sativa

32% id,
84% cov

ASA2_ORYSJ / Q9XJ29: Anthranilate synthase alpha subunit 2, chloroplastic; OsASA2; EC 4.1.3.27 from Oryza sativa

32% id,
79% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory