Curated BLAST for Genomes

 

Curated BLAST

Searching in Algiphilus aromaticivorans DG1253 (GCF_000733765.1)

Found 31 curated entries in PaperBLAST's database that match '4.1.3.30' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Algiphilus aromaticivorans DG1253, or try another query

prpB U743_RS01510 WP_043764975.1: methylisocitrate lyase
is similar to:
PaperBLAST

RR42_RS11260: Methylisocitrate lyase (EC 4.1.3.30) from Cupriavidus basilensis

82% id,
96% cov

Pf6N2E2_6061: Methylisocitrate lyase (EC 4.1.3.30) from Pseudomonas fluorescens

79% id,
99% cov

prpB / Q0KAG5: 2-methylcitrate lyase (EC 4.1.3.30) from Cupriavidus necator

81% id,
96% cov

More...

aceA U743_RS06375 WP_232226733.1: isocitrate lyase
is similar to:
PaperBLAST

ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis

59% id,
98% cov

ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis

37% id,
62% cov

ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans

33% id,
67% cov

More...

U743_RS13075 WP_043768860.1: hypothetical protein
is similar to:
PaperBLAST

PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum

40% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory